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                  <h1>Tissues</h1>
                
                <h2 id="li">Li</h2>
<ul>
<li><a href="http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3818.html">Li, H. et al. Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors. Nat. Genet. (2017)</a></li>
</ul>
<table>
<thead>
<tr>
<th align="center">Accession</th>
<th align="center">Protocol</th>
<th align="center">Size</th>
<th align="center">Scripts</th>
<th align="center">Download</th>
<th align="center">Report</th>
</tr>
</thead>
<tbody>
<tr>
<td align="center"><a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81861">GSE81861</a></td>
<td align="center"><a href="http://www.clontech.com/US/Products/cDNA_Synthesis_and_Library_Construction/Next_Gen_Sequencing_Kits/Total_RNA-Seq/Universal_RNA_Seq_Random_Primed">SMARTer</a></td>
<td align="center">55186 features<br>561 samples</td>
<td align="center"><a href="https://github.com/hemberg-lab/scRNA.seq.datasets/blob/master/bash/li.sh">bash</a><br><a href="https://github.com/hemberg-lab/scRNA.seq.datasets/blob/master/R/li.R">R</a></td>
<td align="center"><a href="https://scrnaseq-public-datasets.s3.amazonaws.com/scater-objects/li.rds">SCESet</a></td>
<td align="center"><a href="https://scrnaseq-public-datasets.s3.amazonaws.com/scater-reports/li.html">html</a></td>
</tr>
</tbody>
</table>
<hr>

<h2 id="patel">Patel</h2>
<ul>
<li><a href="http://dx.doi.org/10.1126/science.1254257">Patel, A. P. et al. Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma. Science 344, 1396–1401 (2014)</a></li>
</ul>
<table>
<thead>
<tr>
<th align="center">Accession</th>
<th align="center">Protocol</th>
<th align="center">Size</th>
<th align="center">Scripts</th>
<th align="center">Download</th>
<th align="center">Report</th>
</tr>
</thead>
<tbody>
<tr>
<td align="center"><a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE57872">GSE57872</a></td>
<td align="center"><a href="http://dx.doi.org/10.1038/nbt.2282">Smart-Seq</a></td>
<td align="center">5948 features<br>430 samples</td>
<td align="center"><a href="https://github.com/hemberg-lab/scRNA.seq.datasets/blob/master/bash/patel.sh">bash</a><br><a href="https://github.com/hemberg-lab/scRNA.seq.datasets/blob/master/R/patel.R">R</a></td>
<td align="center"><a href="https://scrnaseq-public-datasets.s3.amazonaws.com/scater-objects/patel.rds">SCESet</a></td>
<td align="center"><a href="https://scrnaseq-public-datasets.s3.amazonaws.com/scater-reports/patel.html">html</a></td>
</tr>
</tbody>
</table>
<hr>

<h2 id="pollen">Pollen</h2>
<ul>
<li><a href="http://dx.doi.org/10.1038/nbt.2967">Pollen, A. A. et al. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nat. Biotechnol. 32, 1053–1058 (2014).</a></li>
</ul>
<div class="admonition note">
<p class="admonition-title">Note</p>
<p>TPM values together with cell type annotations were obtained from Alex Pollen on 15/10/15 and are stored <a href="https://s3.amazonaws.com/scrnaseq-public-datasets/manual-data/pollen/NBT_hiseq_linear_tpm_values.txt">here</a>.</p>
</div>
<table>
<thead>
<tr>
<th align="center">Accession</th>
<th align="center">Protocol</th>
<th align="center">Size</th>
<th align="center">Scripts</th>
<th align="center">Download</th>
<th align="center">Report</th>
</tr>
</thead>
<tbody>
<tr>
<td align="center"><a href="https://www.ncbi.nlm.nih.gov/sra?term=SRP041736">SRP041736</a></td>
<td align="center"><a href="http://www.clontech.com/US/Products/cDNA_Synthesis_and_Library_Construction/Next_Gen_Sequencing_Kits/Total_RNA-Seq/Universal_RNA_Seq_Random_Primed">SMARTer</a></td>
<td align="center">23730 features<br>301 samples</td>
<td align="center"><a href="https://github.com/hemberg-lab/scRNA.seq.datasets/blob/master/bash/pollen.sh">bash</a><br><a href="https://github.com/hemberg-lab/scRNA.seq.datasets/blob/master/R/pollen.R">R</a></td>
<td align="center"><a href="https://scrnaseq-public-datasets.s3.amazonaws.com/scater-objects/pollen.rds">SCESet</a></td>
<td align="center"><a href="https://scrnaseq-public-datasets.s3.amazonaws.com/scater-reports/pollen.html">html</a></td>
</tr>
</tbody>
</table>
                
                  
                
              
              
                
              
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